Vinhthuy Phan: search on Z-Library

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1

Leveraging known genomic variants to improve detection of variants, especially close-by Indels

Vo, Nam S, Phan, Vinhthuy

Journal:

Year:

2018

Language:

english

File:

PDF, 617 KB

english, 2018

2

Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets

Sujoy Roy, Kevin Heinrich, Vinhthuy Phan, Michael W Berry, Ramin Homayouni

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 446 KB

english, 2011

3

mDAG: a web-based tool for analyzing microarray data with multiple treatments

Vinhthuy T Phan, Nam S Vo, Thomas R Sutter

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 148 KB

english, 2011

4

On codeword design in metric DNA spaces

Vinhthuy Phan, Max H. Garzon

Journal:

Natural Computing

Year:

2009

Language:

english

File:

PDF, 380 KB

english, 2009

5

Motif Tool Manager: a web-based platform for motif discovery

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 133 KB

english, 2009

6

[IEEE 2008 IEEE International Conference on Bioinformatics and Biomedicine - Philadelphia, PA, USA (2008.11.3-2008.11.5)] 2008 IEEE International Conference on Bioinformatics and Biomedicine - Synthetic Gene Design with a Large Number of Hidden Stop Codons

Phan, Vinhthuy, Saha, Sudip, Pandey, Ashutosh, Tit-Yee, Wong

Year:

2008

Language:

english

File:

PDF, 161 KB

english, 2008

7

Using partially ordered sets to represent and predict true patterns of gene response to treatments

Vo, Nam S, Phan, Vinhthuy

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 69 KB

english, 2013

8

RandAL: a randomized approach to aligning DNA sequences to reference genomes

Nam S Vo,Quang Tran,Nobal Niraula,Vinhthuy Phan

Journal:

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

9

[IEEE 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Miami, FL, USA (2014.6.2-2014.6.4)] 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - How genome complexity can explain the hardness of aligning reads to genomes

Phan, Vinhthuy, Gao, Shanshan, Tran, Quang, Vo, Nam S.

Year:

2014

Language:

english

File:

PDF, 691 KB

english, 2014

10

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - A randomized algorithm for aligning DNA sequences to reference genomes

Vo, Nam S., Tran, Quang, Niraula, Nobal, Phan, Vinhthuy

Year:

2013

Language:

english

File:

PDF, 334 KB

english, 2013

11

ANALYZING MICROARRAY DATA WITH TRANSITIVE DIRECTED ACYCLIC GRAPHS

PHAN, VINHTHUY, OLUSEGUN GEORGE, E., TRAN, QUYNH T., GOODWIN, SHIRLEAN, BODREDDIGARI, SRIDEVI, SUTTER, THOMAS R.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2009

Language:

english

File:

PDF, 639 KB

english, 2009

12

[ACM Press the ACM Conference - Orlando, Florida (2012.10.07-2012.10.10)] Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '12 - Pattern analysis

Vo, Nam S., Phan, Vinhthuy

Year:

2012

Language:

english

File:

PDF, 324 KB

english, 2012

13

[ACM Press the ACM Conference - Orlando, Florida (2012.10.07-2012.10.10)] Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '12 - Predicting possible directed-graph patterns of gene expressions in studies involving multiple treatments

Vo, Nam S., Phan, Vinhthuy, Sutter, Thomas R.

Year:

2012

Language:

english

File:

PDF, 207 KB

english, 2012

14

SPIE Proceedings [SPIE SPIE's 27th Annual International Symposium on Microlithography - Santa Clara, CA (Sunday 3 March 2002)] Optical Microlithography XV - Improved line-end foreshortening and corner-rounding control in optical proximity correction using radius of curvature method

Mukherjee, Maharaj, Phan, Vinhthuy, Yen, Anthony

Year:

2002

Language:

english

File:

PDF, 217 KB

english, 2002

15

Synthetic gene design with a large number of hidden stops

Phan, Vinhthuy, Saha, Sudip, Pandey, Ashutosh, Wong, Tit Yee

Journal:

International Journal of Data Mining and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 808 KB

english, 2010

16

Exploiting dependencies of pairwise comparison outcomes to predict patterns of gene response

Vo, Nam S, Phan, Vinhthuy

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.27 MB

english, 2014

17

BioTDMS: a general-purpose system for integrative management of bioinformatics tools and data

Phan, Vinhthuy, Malasri, Kriangsiri

Journal:

International Journal of Computational Biology and Drug Design

Year:

2008

Language:

english

File:

PDF, 644 KB

english, 2008

18

Stability of RNA structural motifs and its influence on editing efficiency by adenosine deaminases

Phan, Vinhthuy, Thomas, Allen, Malasri, Kriangsiri, Sutter, Carrie Hayes

Journal:

International Journal of Bioinformatics Research and Applications

Year:

2010

Language:

english

File:

PDF, 2.11 MB

english, 2010

19

An accurate and fast alignment-free method for profiling microbial communities

Pham, Diem-Trang, Gao, Shanshan, Phan, Vinhthuy

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2017

Language:

english

File:

PDF, 231 KB

english, 2017

20

Determining gene response patterns of time series gene expression data using R

Kevin L O’kello,Vinhthuy Phan

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 215 KB

english, 2014

21

Exploiting the bootstrap method to analyze patterns of gene expression

Nam S Vo,Vinhthuy Phan

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 220 KB

english, 2014

22

An integrated approach for SNP calling based on population of genomes

Nam S Vo,Quang Tran,Vinhthuy Phan

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 181 KB

english, 2014

23

Alignment of short reads to multiple genomes using hashing

Quang Tran,Vinhthuy Phan

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 217 KB

english, 2014

24

Alignment-free methods for metagenomic profiling

Shanshan Gao,Diem-Trang Pham,Vinhthuy Phan

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 222 KB

english, 2015

25

How genome complexity can explain the difficulty of aligning reads to genomes

Vinhthuy Phan,Shanshan Gao,Quang Tran,Nam S Vo

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.94 MB

english, 2015

26

Improving variant calling by incorporating known genetic variants into read alignment

Nam S Vo,Vinhthuy Phan

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 181 KB

english, 2015

27

A linear model for predicting performance of short-read aligners using genome complexity

Quang Tran,Shanshan Gao,Nam S Vo,Vinhthuy Phan

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 184 KB

english, 2015

28

Analysis of optimal alignments unfolds aligners’ bias in existing variant profiles

Quang Tran,Shanshan Gao,Vinhthuy Phan

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 699 KB

english, 2016

29

Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities

Tran, Quang, Pham, Diem-Trang, Phan, Vinhthuy

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 771 KB

english, 2017

30

[ACM Press the 23rd Annual ACM Conference - Larnaca, Cyprus (2018.07.02-2018.07.04)] Proceedings of the 23rd Annual ACM Conference on Innovation and Technology in Computer Science Education - ITiCSE 2018 - Code4Brownies: an active learning solution for teaching programming and problem solving in the classroom

Phan, Vinhthuy, Hicks, Eric

Year:

2018

Language:

english

File:

PDF, 3.24 MB

english, 2018

31

icHET: Interactive Visualization of Cytoplasmic Heteroplasmy

Phan, Vinhthuy, Pham, Diem-Trang, Melton, Caroline, Ramsey, Adam, Daigle, Bernie J, Mandel, Jennifer R, Hancock, John

Journal:

Year:

2019

Language:

english

File:

PDF, 223 KB

english, 2019

32

icHET: Interactive Visualization of Cytoplasmic Heteroplasmy

Phan, Vinhthuy, Pham, Diem-Trang, Melton, Caroline, Ramsey, Adam, Daigle, Bernie J, Mandel, Jennifer R, Hancock, John

Journal:

Year:

2019

File:

PDF, 223 KB

2019

33

Assembling Reads Improves Taxonomic Classification of Species

Tran, Quang, Phan, Vinhthuy

Journal:

Year:

2020

File:

PDF, 447 KB

2020